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Please use this identifier to cite or link to this item: http://hdl.handle.net/1942/14477

Title: R Package PamGeneMixed: reprocessing and Modeling Kinase Activity Profiles in PamChip Data
Authors: Thilakarathne, Pushpike
Shkedy, Ziv
Lin, Dan
Issue Date: 2012
Abstract: This package contains the functions that can be used to analyze the PamChip microarray data. The package is mainly useful in fitting semi-parametric mixed effects models while accommodating various types of mean structures and correlation structures present in Kinase activity profiling experiments. The package can be used to visualize, cleaning Pam Chip data. And also it can be used in model fitting, velocity estimating, and testing the estimated velocities between the groups. The PamGeneMixed package is built up as a software implementation for the paper titled The Use of Semi-parametric Mixed Models to Analyze PamChip Peptide Array Data: an Application to an Oncology Experiment which is published in Bioinformatics (2011).
URI: http://hdl.handle.net/1942/14477
Link to publication: http://cran.r-project.org/web/packages/PamGeneMixed/index.html
Category: O
Type: Other
Appears in Collections: Research publications

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